X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getmimarkspackagecommand.h;h=65219d7758b0da0e1f795fb70f957bca5befad64;hb=fefd5ee1517abd3bc38b469cb2dffc85a1571c7e;hp=8bd2e4973c624eaa83d735c349a833181a39daea;hpb=aca78ed4a47dff8672ea8fd93cef0dfbaf0f7495;p=mothur.git

diff --git a/getmimarkspackagecommand.h b/getmimarkspackagecommand.h
index 8bd2e49..65219d7 100644
--- a/getmimarkspackagecommand.h
+++ b/getmimarkspackagecommand.h
@@ -10,6 +10,7 @@
 #define Mothur_getmimarkspackagecommand_h
 
 #include "command.hpp"
+#include "oligos.h"
 
 /**************************************************************************************************/
 
@@ -33,12 +34,10 @@ public:
     
 private:
     bool abort, requiredonly;
-    string oligosfile, groupfile, package, inputfile, file;
+    string oligosfile, groupfile, package, inputfile, file, inputDir;
     string outputDir;
     vector<string> outputNames, Groups;
-    set<string> uniqueNames;
     
-    int readOligos();
     int readFile();
 };