X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=code_ruby%2Flib%2Fmaasha%2Fsam.rb;h=ba192c3c1b46c5051f570cbe099781c6da64fc43;hb=5479490038e34904c92cdd92b1c47034b7452e53;hp=cf5acda4683c12bb63407d02b0abbdbc9318a37e;hpb=27a34d675d07468851f2076a62ca2b8dbefb5923;p=biopieces.git

diff --git a/code_ruby/lib/maasha/sam.rb b/code_ruby/lib/maasha/sam.rb
index cf5acda..ba192c3 100644
--- a/code_ruby/lib/maasha/sam.rb
+++ b/code_ruby/lib/maasha/sam.rb
@@ -76,7 +76,7 @@ class Sam < Filesys
     bp[:SEQ]      = sam[:SEQ].seq
 
     unless sam[:SEQ].qual.nil?
-      bp[:SCORES] = sam[:SEQ].qual
+      bp[:SCORES] = sam[:SEQ].qual_convert!(:base_64, :base_33).qual
     end
 
     if sam[:NM] and sam[:NM].to_i > 0