X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=code_ruby%2Flib%2Fmaasha%2Ffilesys.rb;h=4f58898b91977a3dbc1695ed3191018b316bc34e;hb=508d11515a4f8ac768829b56486c1b660b8f247e;hp=6a6067fbc859bb3df62a7f4eda547c0f44d8070c;hpb=3ce24a349c10a76d3e837e08b81259204ab870fe;p=biopieces.git

diff --git a/code_ruby/lib/maasha/filesys.rb b/code_ruby/lib/maasha/filesys.rb
index 6a6067f..4f58898 100644
--- a/code_ruby/lib/maasha/filesys.rb
+++ b/code_ruby/lib/maasha/filesys.rb
@@ -23,7 +23,8 @@
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 require 'zlib'
-require 'bzip2'
+# require 'bzip2'
+require 'open3'
 
 # Error class for all exceptions to do with Filesys.
 class FilesysError < StandardError; end
@@ -51,7 +52,8 @@ class Filesys
       when :gzip
         ios = Zlib::GzipWriter.new File.open(file, mode, options)
       when :bzip, :bzip2
-        ios = Bzip2::Writer.new File.open(file, mode, options)
+        # ios = Bzip2::Writer.new File.open(file, mode, options)   # TODO being pissed with buggy bzip2 gem.
+        ios, = Open3.pipeline_w("bzip2 -c", out: file)
       else 
         ios = File.open(file, mode, options)
       end