working on trim.seqs

[mothur.git] / trimseqscommand.h

diff --git a/trimseqscommand.h b/trimseqscommand.h
index 601cb6129d1ba5a32e54dad125e4689d9559d5d6..4a1d3d72c4f78e7c81fc22d17d996c68ff093984 100644 (file)
--- a/trimseqscommand.h
+++ b/trimseqscommand.h
@@ -39,6 +39,7 @@ private:
        bool cullHomoP(Sequence&);
        bool cullAmbigs(Sequence&);
        bool compareDNASeq(string, string);
+       bool compareDNASeq(string, string, int, int&);
 
        bool abort;
        string fastaFile, oligoFile, qFileName, outputDir;