Updated CMakeLists.txt files

[bamtools.git] / src / api / internal / BamStandardIndex_p.h

diff --git a/src/api/internal/BamStandardIndex_p.h b/src/api/internal/BamStandardIndex_p.h
index 1bd36c886e7a26a28d40c2df5e16ff40fe8c6758..e49bc26bd2b3637899135f63a4b26180c67aef9c 100644 (file)
--- a/src/api/internal/BamStandardIndex_p.h
+++ b/src/api/internal/BamStandardIndex_p.h
@@ -2,7 +2,7 @@
 // BamStandardIndex.h (c) 2010 Derek Barnett
 // Marth Lab, Department of Biology, Boston College
 // ---------------------------------------------------------------------------
-// Last modified: 6 October 2011 (DB)
+// Last modified: 10 October 2011 (DB)
 // ---------------------------------------------------------------------------
 // Provides index operations for the standardized BAM index format (".bai")
 // ***************************************************************************
@@ -20,8 +20,8 @@
 //
 // We mean it.
 
-#include <api/BamAux.h>
-#include <api/BamIndex.h>
+#include "api/BamAux.h"
+#include "api/BamIndex.h"
 #include <map>
 #include <set>
 #include <string>
@@ -122,8 +122,7 @@ class BamStandardIndex : public BamIndex {
         bool Jump(const BamTools::BamRegion& region, bool* hasAlignmentsInRegion);
         // loads existing data from file into memory
         bool Load(const std::string& filename);
-        // change the index caching behavior
-        void SetCacheMode(const BamIndex::IndexCacheMode& mode);
+        BamIndex::IndexType Type(void) const { return BamIndex::STANDARD; }
     public:
         // returns format's file extension
         static const std::string Extension(void);
@@ -198,7 +197,6 @@ class BamStandardIndex : public BamIndex {
     // data members
     private:
         bool m_isBigEndian;
-        BamIndex::IndexCacheMode m_cacheMode;
         BaiFileSummary m_indexFileSummary;
 
         // our input buffer