Organized api/internal into subdirs

[bamtools.git] / src / api / CMakeLists.txt

diff --git a/src/api/CMakeLists.txt b/src/api/CMakeLists.txt
index e9c3b65785969721e4b591752d7485f7ff239f9f..d6a5b100a7de36e34a103cc7b965b94ecfee37be 100644 (file)
--- a/src/api/CMakeLists.txt
+++ b/src/api/CMakeLists.txt
@@ -25,28 +25,31 @@ set( BamToolsAPISources
         SamReadGroupDictionary.cpp
         SamSequence.cpp
         SamSequenceDictionary.cpp
-        internal/BamDeviceFactory_p.cpp
-        internal/BamFile_p.cpp
-        internal/BamFtp_p.cpp
-        internal/BamHeader_p.cpp
-        internal/BamHttp_p.cpp
-        internal/BamIndexFactory_p.cpp
-        internal/BamMultiReader_p.cpp
-        internal/BamPipe_p.cpp
-        internal/BamRandomAccessController_p.cpp
-        internal/BamReader_p.cpp
-        internal/BamStandardIndex_p.cpp
-        internal/BamToolsIndex_p.cpp
-        internal/BamWriter_p.cpp
-        internal/BgzfStream_p.cpp
-        internal/SamFormatParser_p.cpp
-        internal/SamFormatPrinter_p.cpp
-        internal/SamHeaderValidator_p.cpp
+        internal/bam/BamHeader_p.cpp
+        internal/bam/BamMultiReader_p.cpp
+        internal/bam/BamRandomAccessController_p.cpp
+        internal/bam/BamReader_p.cpp
+        internal/bam/BamWriter_p.cpp
+        internal/index/BamIndexFactory_p.cpp
+        internal/index/BamStandardIndex_p.cpp
+        internal/index/BamToolsIndex_p.cpp
+        internal/io/BamDeviceFactory_p.cpp
+        internal/io/BamFile_p.cpp
+        internal/io/BamFtp_p.cpp
+        internal/io/BamHttp_p.cpp
+        internal/io/BamPipe_p.cpp
+        internal/io/BgzfStream_p.cpp
+        internal/io/ILocalIODevice_p.cpp
+        internal/io/IRemoteIODevice_p.cpp
+        internal/sam/SamFormatParser_p.cpp
+        internal/sam/SamFormatPrinter_p.cpp
+        internal/sam/SamHeaderValidator_p.cpp
+        internal/utils/BamException_p.cpp
 )
 
 # create main BamTools API shared library
 add_library( BamTools SHARED ${BamToolsAPISources} )
-set_target_properties( BamTools PROPERTIES SOVERSION "1.0.2" )
+set_target_properties( BamTools PROPERTIES SOVERSION "2.0.5" )
 set_target_properties( BamTools PROPERTIES OUTPUT_NAME "bamtools" )
 
 # create main BamTools API static library
@@ -66,6 +69,7 @@ install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
 include(../ExportHeader.cmake)
 set(ApiIncludeDir "api")
 ExportHeader(APIHeaders api_global.h             ${ApiIncludeDir})
+ExportHeader(APIHeaders BamAlgorithms.h           ${ApiIncludeDir})
 ExportHeader(APIHeaders BamAlignment.h           ${ApiIncludeDir})
 ExportHeader(APIHeaders BamAux.h                 ${ApiIncludeDir})
 ExportHeader(APIHeaders BamConstants.h           ${ApiIncludeDir})
@@ -82,3 +86,6 @@ ExportHeader(APIHeaders SamReadGroup.h           ${ApiIncludeDir})
 ExportHeader(APIHeaders SamReadGroupDictionary.h ${ApiIncludeDir})
 ExportHeader(APIHeaders SamSequence.h            ${ApiIncludeDir})
 ExportHeader(APIHeaders SamSequenceDictionary.h  ${ApiIncludeDir})
+
+set(AlgorithmsIncludeDir "api/algorithms")
+ExportHeader(AlgorithmsHeaders algorithms/Sort.h ${AlgorithmsIncludeDir})