.IR minBaseQ ]
.RB [ \-q
.IR minMapQ ]
+.RB [ \-c
+.IR Output file [stdout] ]
.I in.bam
.RI [ in2.bam
.RI [ ... ]]
Similar to
.B -g
except that the output is uncompressed BCF, which is preferred for piping.
+.TP
+.BR \-c ", " \-\-output =\fIFILE\fR
+File to output bcf (vcf with \fB\-g\fR) to; default is stdout.
.TP
.B Options for Genotype Likelihood Computation (for -g or -u):