else if (countfile == "not open") { abort = true; countfile = ""; }
else {
m->setCountTableFile(countfile);
- ct.readTable(countfile);
+ ct.readTable(countfile, true);
if (!ct.hasGroupInfo()) {
abort = true;
m->mothurOut("[ERROR]: The parse.list command requires group info to be present in your countfile, quitting."); m->mothurOutEndLine();