string getCommandName() { return "collect.single"; }
string getCommandCategory() { return "OTU-Based Approaches"; }
string getCitation() { return "Schloss PD, Handelsman J (2006). Introducing SONS, A tool that compares the membership of microbial communities. Appl Environ Microbiol 72: 6773-9. \nhttp://www.mothur.org/wiki/Collect.single"; }
+
string getHelpString();
+ string getOutputPattern(string);
string getDescription() { return "generates collector's curves using calculators, that describe the richness, diversity, and other features of individual samples"; }
int execute();
InputData* input;
Collect* cCurve;
vector<Display*> cDisplays;
- int abund, size;
+ int abund, size, alpha;
float freq;
vector<string> outputNames;