ported write_fasta to ruby enabling bzip2 support

[biopieces.git] / bp_test / test / test_write_fasta

diff --git a/bp_test/test/test_write_fasta b/bp_test/test/test_write_fasta
index 9ae850296354a336707fc50f813b1e743a7bfb99..4307e2590cd68261d3c82b0919420bb23fae9b67 100755 (executable)
--- a/bp_test/test/test_write_fasta
+++ b/bp_test/test/test_write_fasta
@@ -2,15 +2,20 @@
 
 source "$BP_DIR/bp_test/lib/test.sh"
 
-run "write_fasta -I $in -o $tmp -x"
+run "$bp -I $in -o $tmp -x"
 assert_no_diff $tmp $out.1
-rm $tmp
+clean
 
-run "write_fasta -I $in -w 4 -o $tmp -x"
+run "$bp -I $in -w 4 -o $tmp -x"
 assert_no_diff $tmp $out.2
-rm $tmp
+clean
 
-# This one will not work for some reason?
-# run "write_fasta -I $in -w 4 -Z -o $tmp -x"
-# assert_no_diff $tmp $out.3
-# rm $tmp
+run "$bp -I $in -w 4 -Z gzip -o $tmp.gz -x"
+gunzip $tmp.gz
+assert_no_diff $tmp $out.3
+clean
+
+run "$bp -I $in -w 4 -Z bzip2 -o $tmp.bz2 -x"
+bunzip2 $tmp.bz2
+assert_no_diff $tmp $out.3
+clean