]> git.donarmstrong.com Git - biopieces.git/blobdiff - bp_test/out/assemble_pairs.out.1
refactoring of assemble_pairs
[biopieces.git] / bp_test / out / assemble_pairs.out.1
index 1e92ed0f52605e9146f5e21ae0d67cea95c56825..f9cf1750ad17d75a7f7b3441ab59a77bdadd1f13 100644 (file)
@@ -1,25 +1,30 @@
-SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14862:1868:14
-SEQ: TGGGGAATATTGGACAATGGGGGCAACCCTGATCCAGCAATACCGCGTGTGTGAAGAAGGCCTGAGGGTTGTAAAGCACTTTCAATTGTGAAGAAAAGTTAACGGTTAATAACCGTTAGCCTTGACGTTAACTTTAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGTAGGCGGTTTATTAAGTCAGATGTGAAAGCCCCGGGCTTAACCTGGGAACTGCATTTGAAACTGGTCAACTAGAGTATGGTAGAGGAAAGTGGAATTTCTGGTGTAGCGGTGAAATGCGTAGATATCAGAAGGAACATCAATGGCGAAGGCAGCTTTCTGGACCAATACTGACGCTGAGGTACGAAAGCGTGGGTAGCAAACAGG
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14862:1868 1:N:0:14:overlap=49
+SEQ: tggggaatattggacaatgggggcaaccctgatccagcaataccgcgtgtgtgaagaaggcctgagggttgtaaagcactttcaattgtgaagaaaagttaacggttaataaccgttagccttgacgttaactttagaagaagcaccggctaactccgtgccagcagccgcggtaatacggagggtgcaagcgttaatcgGAATTACTGGGCGTAAAGCGTGCGTAGGCGGTTTATTAAGTCAGATGTGaaagccccgggcttaacctgggaactgcatttgaaactggtcaactagagtatggtagaggaaagtggaatttctggtgtagcggtgaaatgcgtagatatcagaaggaacatcaatggcgaaggcagctttctggaccaatactgacgctgaggtacgaaagcgtgggtagcaaacagg
 SEQ_LEN: 429
-SCORES: [^^^^^^accccccccfffffffgghhhdghggeffgeggfgeggcgdgdgge`eefeegeggeegggdeddggggggggggggeeegeggggggggggggfacdffffffffffffffffdfdfffffbdffffdbbdbdddbfff[`cfbfffdffdfffffdfbdW]Q]cb[dddffb^[cfbbbdbYb^bbdffffXXHPIPI]MMWNNHDHOIYYVFHOMHPSFHQMSW`X\@]^[Y`IX\_XX``ZSFWcW^YYY`^PIH\KK\\db\\KK`beb``dab\`debdadcacddcdc\dcc\^aeaecea]cee_eeegggggggggfffccggggegcghgggghhhhhggefbeeggd]ddcef^ghgfeffeeeee^bcbd^XedgcggfdZeZhgeegeeeddeccccca[L[aa^^^^^
+SCORES: !??????BDDDDDDDDGGGGGGGHHIIIEHIHHFGGHFHHGHFHHDHEHEHHFAFFGFFHFHHFFHHHEFEEHHHHHHHHHHHHFFFHFHHHHHHHHHHHHGBDEGGGGGGGGGGGGGGGGEGEGGGGGCEGGGGECCECEEECGGG!ADGCGGGEGGEGGGGGEGCE8!2!DC!EEEGGC?!DGCCCEC:C?CCEGGGG??288<8B47>43,(195??=36)745<6.;:=?D?@6AB?@D8?@C=?AA;4'8D8?:::A?1*)=,,==EC==,,ACFCAAEBC=AEFCEBEDBDEEDED=EDD=?BFBFDFB!DFF@FFFHHHHHHHHHGGGDDHHHHFHDHIHHHHIIIIIHHFGCFFHHE!EEDFG?HIHGFGGFFFFF?CDCE?9FEHDHHGE;F;IHFFHFFFEEFDDDDDB!-!BB?????
+OVERLAP_LEN: 49
 ---
-SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13906:2139:14
-SEQ: TAGGGAATCTTGCACAATGGAGGAAACTCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCTTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGGTGGTGAAATCCCAGAGCTTAACTCTGGAACTGCCATCAAAACTTTTTAGCTAGAGTATGATAGAGGAAAGCAGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAGAATACCGATTGCGAAGGCAGCTTTCTGGATCATTACTGACGCTGAGGAACGAAAGCATGGGTAGCGAAGA
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13906:2139 1:N:0:14:overlap=96
+SEQ: tagggaatcttgcacaatggaggaaactctgatgcagcgatgccgcgtgagtgaagaaggcctttgggttgtaaagctctttcgtcggggaagaaaatgactgtacccgaataagaaggtccggctaacttcgtgccagcagccgcggtaatacgAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGGTGGTGAAATCCCAGAGCTTAACTCTGGAACTGccatcaaaactttttagctagagtatgatagaggaaagcagaatttctagtgtagaggtgaaattcgtagatattagaaagaataccgattgcgaaggcagctttctggatcattactgacgctgaggaacgaaagcatgggtagcgaaga
 SEQ_LEN: 402
-SCORES: [^^^X^aaacaccacceeeeeeggghegegghggeggggdccdfgggbdgd^degefgegeghghhhgbdbdgggheghhhgfgeggggggddeeeeeddeeedeeedddddeeeeeeebdeaddcdeeeeeededeeddeeeecccc`^dddee]Y_YI^VMHMSHPIIZ\WYa`^[I]PWI]^]W_a`Y\Y]WXH\`aa_WXPIYaZY]`_@MOX\WUOFMHVXI]a]I]I]^IY][SI@MMZ\_`][X`\`ddbbddddca\eededddcdeeeaeeeee^Mgecacc^eegegeeegeeeggffffbae`gghgegggfbffhhhgggfdT]geacd_d_cfgggeeeghggeefecbO^d^egdgdghhggeghgegeeeeeeccaca`cc^aa^^[
+SCORES: !???9?BBBDBDDBDDFFFFFFHHHIFHFHHIHHFHHHHEDDEGHHHCEHE?EFHFGHFHFHIHIIIHCECEHHHIFHIIIHGHFHHHHHHEEFFFFFEEFFFEFFFEEEEEFFFFFFFCEFBEEDEFFFFFFEFEFFEEFFFFDDDDA?EEEFFB@C?8B=:7785;660@?@FEB?7B;?2BBA?CED@@@B?=5@DEFD??;8@E0@BEC788>@?95*4-:=7BEB8B7BB2@B?8&+98>2CDBB>A=AEECCEEEEDB=FFEFEEEDEFFFBFFFFF?.HFDBDD?FFHFHFFFHFFFHHGGGGCBFAHHIHFHHHGCGGIIIHHHGE5!HFBDE@E@DGHHHFFFHIHHFFGFDC0?E?FHEHEHIIHHFHIHFHFFFFFFDDBDBADD?BB??!
+OVERLAP_LEN: 96
 ---
-SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14865:2158:14
-SEQ: TAGGGAATCTTGCACAATGGAGGAAACTCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCTTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGGTGGTGAAATCCCAGAGCTTAACTCTGGAACTGCCATCAAAACTTTTTAGCTAGAGTATGATAGAGGAAAGCAGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAGAATACCGATTGCGAAGGCAGCTTTCTGGATCATTACTGACACTGAGGAACGAAAGCATGGGTAGCGAAG
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14865:2158 1:N:0:14:overlap=96
+SEQ: tagggaatcttgcacaatggaggaaactctgatgcagcgatgccgcgtgagtgaagaaggcctttgggttgtaaagctctttcgtcggggaagaaaatgactgtacccgaataagaaggtccggctaacttcgtgccagcagccgcggtaatacGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGGTGGTGAAATCCCAGAGCTTAACTCTGGAACTgccatcaaaactttttagctagagtatgatagaggaaagcagaatttctagtgtagaggtgaaattcgtagatattagaaagaataccgattgcgaaggcagctttctggatcattactgacactgaggaacgaaagcatgggtagcgaag
 SEQ_LEN: 401
-SCORES: ^^^^^aaaaaccaccaeeeeeedbgegegegfggefc^]begggggg]cddeeeeceege_eggghegddggghhggghghgggcdggggeddeee^eddddeddeeddY]bddedeeeadddddcdedYY`dY^`dbdede^`]ZcWWZbddd_YYION__]_WY_VO[SLHX_`]X_^YOOWIY^Y__`aY`\XI\^W]^]VIONIY_`^XI\X^^YVIUVHXIVNY]IYXWIIPIIPP[\X_]`_Y\bbZddddddcddccZ\cea^eeceeea^b\eeee^ggecc_Mcbeggegggfeggeggfdbaeeede^bgefd`^^ggghgggeb]d_ccdccegggcgffead^b\ee^bb^\e^bge`XbOfageegeZgeee^eeaaaaa^aa^a^^[
+SCORES: ?????BBBBBDDBDDBFFFFFFECHFHFHFHGHHFGD?!CFHHHHHH!DEEFFFFDFFHF@FHHHIFHEEHHHIIHHHIHIHHHDEHHHHFEEFFF?FEEEEFEEFFEE:!CEEFEFFFBEEEEEDEFE::AE:?AECEFEF?A!;D88;CEEEC@@668CCBC??C;8?+02>CEA>CB@;;?8@B@CCDE@D@?5@B>ABB:2::1>CDB=/@>BB@<19=4?6:7@A6@=?36875:8?A=DBDC@ACC;EEEEEEDEEDD;=DFB?FFDFFFB?C=FFFF?HHFDD@.DCFHHFHHHGFHHFHHGECBFFFEF?CHFGEA??HHHIHHHFC!E@DDEDDFHHHDHGGFBE?C=FF?CC?=F?CHFA9C0GBHFFHF;HFFF?FFBBBBB?BB?B??!
+OVERLAP_LEN: 96
 ---
-SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:17246:2253:14
-SEQ: AGGGAATCTTGCACAATGGGGGAAACCCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCCTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGATGGTGAAATCCCAAGGCTCAACCTTGGAACTGCCATCAAAACTTTTTAGCTAGAGTATGATAGAGGAAAGTGGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAGAACATCAAAAGCGAAGGCAACTTTCTGGATCATTACTGACACTGAGGAACGAAAGCATGGGTAGCGAAGAGG
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:17246:2253 1:N:0:14:overlap=96
+SEQ: agggaatcttgcacaatgggggaaaccctgatgcagcgatgccgcgtgagtgaagaaggcccttgggttgtaaagctctttcgtcggggaagaaaatgactgtacccgaataagaaggtccggctaacttcgtgccagcagccgcggtaatacGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGATGGTGAAATCCCAAGGCTCAACCTTGGAACTgccatcaaaactttttagctagagtatgatagaggaaagtggaatttctagtgtagaggtgaaattcgtagatattagaaagaacatcaaaagcgaaggcaactttctggatcattactgacactgaggaacgaaagcatgggtagcgaagagg
 SEQ_LEN: 403
-SCORES: [^^^aL[L^[aaaaaeeeZ]bdddbbZdeeg\dfad\bdegc_bcbd]J]Tb\ea`d`cgedggggggdbbf\bc\bbe\cb\cc`bddTYcddddbadbdbR^RZ^aY_bdddbddb^bb^^^^d^b```d^`bdddddddd^^^^`ZHYY`^_a]O_]@RUMFHEHOPH_]YXaa]XX[VIVXXYI\I]IXFNUFVVOVOIIOP`V]`IISILX_a^IYINON]XX\IIOIHIKVWMHNWXINX\XKSMdeddddccdeacceeeeeeggggeebbM^geebegececceefaaggggefcggffaghgghhgggcfgggedbgghhgegfd`Jggeb_dghhggfedfggefcgfccbO^ffefbXO`Ocaeehhgegeeeeeaaaaacaa^^aa^^^^^
+SCORES: !???B-!-?!BBBBBFFF;!CEEECC;EFFH=EGBE=CEFHD@CDCE!+!5C=FBAEADHFEHHHHHHECCG=CD=CCF=DC=DDACEE5:DEEEECBECEC3?3;?B:@CEEECEEC?CC????E?CAAAE?ACEEEEEEEE????A;)::ABCEB8CA669967)2955CA@=FEB=??<2:>?@6@7B7>449*<<9<957:9D;AD88;60?CEB2@8:;:B?>@749-663=<2-6<>46>A=64.EFEEEEDDEFBDDFFFFFFHHHHFFCC.?HFFCFHFDFDDFFGBBHHHHFGDHHGGBHIHHIIHHHDGHHHFECHHIIHFHGEA+HHFC@EHIIHHGFEGHHFGDHGDDC0?GGFGC90A0DBFFIIHFHFFFFFBBBBBDBB??BB?????
+OVERLAP_LEN: 96
 ---
-SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13072:2276:14
-SEQ: GGGAATTTTGCGCAATGGGCGAAAGCCTGACGCAGCAACGCCGCGGGATCGAAGAAGCTCTGCGGAGTGTAAAGATCTGTCATAAGGGAAGAATAACGAGTATTCTAACAAAATATTCGTCTGACGGTACCTTATAAGAAAGCCACGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAGGGGGGCAAGCGTTATCCGGAATCATTGGGCGTAAAGGGGTCGTATGAGGACTGATCAGTTGGAATTAAAAGACCGCGGCTTAACCGGGGGAACGGTTTCAATACTGTCAGTCTTGAGTGAGGTAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACATCAAAGGCGAAGGCAGCTTACTGGGCCTATACTGACGCTGAGGAACGAAAGCGTGGGGAGCAAAC
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13072:2276 1:N:0:14:overlap=9
+SEQ: gggaattttgcgcaatgggcgaaagcctgacgcagcaacgccgcgggatcgaagaagctctgcggagtgtaaagatctgtcataagggaagaataacgagtattctaacaaaatattcgtctgacggtaccttataagaaagccacggctaacttcgtgccagcagccgcggtaatacgaggggggcaagcgttatccggaatcattgggcgtaaaggggtcgtatgaggACTGATCAGttggaattaaaagaccgcggcttaaccgggggaacggtttcaatactgtcagtcttgagtgaggtagaggtaagcggaattcctggtgtagcggtgaaatgcgtagatatcaggaggaacatcaaaggcgaaggcagcttactgggcctatactgacgctgaggaacgaaagcgtggggagcaaac
 SEQ_LEN: 425
-SCORES: ^^^^^a^aa[LT_abXbeea]Jb]b]d^_a\]K]T]edK]VV]bdH[[Ybc\_cdegccabeeddWY\_Kac\KRZadddd^Zabbdbbbd^aZ^aRY``WW^YIIYb```WWYYYYY^^WIH`bHMW^HIY^^^YO^bd``dWIISZWZ``Y^^YWY^^W^ddY`b^ZSQMHS^IYYWHMFFFMMFMWbW`HW``dY`Z^FOY^b`dd^WFFS`W^IWFOHFFWIOINYZWWYZZTTGUUUUMMNNGGUNFGMFFFUGUZUSLQFWGUNNNLFXUZNGZW_ZIVWIZ____XIIOIWWZ_OIQIX_RIcPXXZXXcccXXc_dcdbbcccccddccXdccccdddccdb]cd_`bT`\bb`d]TbXJd\_ca_ceeb\bJddd`XM`XXXdbV_VLb]`Ndb``ddddddb_____LTL]][[[
+SCORES: ?????B?BB!-5@BC9CFFB!+C!C!E?@B=!,!5!FE,!77!CE)!!:CD=@DEFHDDBCFFEE8:=@,BD=,3;BEEEE?;BCCECCCE?B;?B3:AA88?:**:CAAA88:::::??8*)AC).8?)*:???:0?CEAAE8**4;8;AA:??:8:??8?EE:AC?;42.)4?*::8).'''..'.8C8A)8AAE:A;?'0:?CAEE?8''4A8?*8'0)''8*0*/:2?.?32;816666..//((6/'(.'''6(6;64-2'8(6///-'96;/(;8@;*78*;@@@@9**0*88;@0*2*9@3*D199;99DDD99D@EDECCDDDDDEEDD9EDDDDEEEDDEC!DE@AC5A=CCAE!5C9+E=@DB@DFFC=C+EEEA9.A999EC7@7-C!A/ECAAEEEEEEC@@@@@-5-!!!!!
+OVERLAP_LEN: 9
 ---