fixing usearch upgrade

[biopieces.git] / bp_test / lib / test.sh

diff --git a/bp_test/lib/test.sh b/bp_test/lib/test.sh
index c58c531836b67939dabcc8d93e8a0d1ff923872a..7ce41900d12068649fdf92320f6110f779c17398 100755 (executable)
--- a/bp_test/lib/test.sh
+++ b/bp_test/lib/test.sh
@@ -3,35 +3,121 @@
 bp=`basename $0 | sed s/^test_//`
 in="$BP_DIR/bp_test/in/$bp.in"
 out="$BP_DIR/bp_test/out/$bp.out"
-tmp="$BP_TMP/$bp.out"
-log_file="$BP_TMP/test.log"
+tmp="$BP_TMP/$USER.$bp.out"
+tmp_dir="$BP_TMP/$USER.test_tmp"
+log_file="$BP_TMP/$USER.test.log"
 
+# Function to run a given command (verbose).
 function run
 {
     local command=$1
 
-    echo -n "Testing $command ... "
+    msg="${command/$BP_DIR/\$BP_DIR}"
+    msg="${msg//$BP_TMP/\$BP_TMP}"
+    msg="${msg/$BP_DIR/\$BP_DIR}"
+
+    echo -n "Testing $msg ... "
     eval $command > /dev/null 2>&1
 }
 
+# Function to run a given command (quiet).
+function run_quiet
+{
+    local command=$1
 
+    eval $command > /dev/null 2>&1
+}
+
+# Function to assert no difference between
+# two given files.
 function assert_no_diff
 {
     local src=$1
     local dst=$2
 
+    if [ ! -f $src ]; then
+        echo_red "FAIL"
+        log "FAIL"
+        return
+    fi
+
+    if [ ! -f $dst ]; then
+        echo_red "FAIL"
+        log "FAIL"
+        return
+    fi
+
     local diff=`diff -q $src $dst`
      
     if [ "$diff" != "" ]; then
         echo_red "FAIL"
-        echo "FAIL" >> $log_file
+        log "FAIL"
     else     
         echo_green "OK"
-        echo "OK" >> $log_file
+        log "OK"
     fi     
 }
 
+# Function to assert no difference between the content
+# of two given direcories (recursive).
+function assert_no_diff_dir
+{
+    local src_dir=$1
+    local dst_dir=$2
+
+    if [ ! -d $src_dir ]; then
+        echo_red "FAIL"
+        log "FAIL"
+        return
+    fi
+
+    if [ ! -d $dst_dir ]; then
+        echo_red "FAIL"
+        log "FAIL"
+        return
+    fi
+
+    local src_cksum=`find $src_dir -type f | grep -v "\.svn" | sort | xargs cat | cksum`
+    local dst_cksum=`find $dst_dir -type f | grep -v "\.svn" | sort | xargs cat | cksum`
+
+    if [ "$src_cksum" == "$dst_cksum" ]; then
+        echo_green "OK"
+        log "OK"
+    else
+        echo_red "FAIL"
+        log "FAIL"
+    fi
+}
+
+# Function to assert that all given files do exists.
+function assert_files_exists
+{
+    error=0
+
+    for arg in "$@"; do
+        if [ ! -f $arg ]; then
+            error=1
+        fi
+    done
+
+    if [ $error = 1 ]; then
+        echo_red "FAIL"
+        log "FAIL"
+    else
+        echo_green "OK"
+        log "OK"
+    fi
+}
+
+# Function to output a given message to the log file.
+function log
+{
+    local msg=$1
+
+    echo "$msg" >> $log_file
+}
 
+# Function that renders a given message in ASCII green.
 function echo_green
 {
     local msg=$1
@@ -39,9 +125,106 @@ function echo_green
     echo -e "\033[32;38m$msg\033[0m"
 }
 
+# Function that renders a given message in ASCII yellow.
+function echo_yellow
+{
+    local msg=$1
+
+    echo -e "\033[33;38m$msg\033[0m"
+}
+
+# Function that renders a given message in ASCII red.
 function echo_red
 {
     local msg=$1
 
     echo -e "\033[31;38m$msg\033[0m"
 }
+
+# Function to clean the temporary file.
+function clean
+{
+    if [ -f "$tmp" ]; then
+        rm "$tmp"
+    fi
+}
+
+# Function to test if the required version of Perl is installed.
+function test_perl
+{
+    echo -n "Testing Perl version ... "
+
+    if error=$( perl -e 'use 5.8.0;' 2>&1 ); then
+        echo_green "OK"
+        log "OK"
+    else
+        echo $error | sed "s/, stopped.*//"
+        echo_red "FAIL"
+        exit
+    fi  
+}
+
+# Function to test if a given Perl module is installed.
+function test_perl_module
+{
+    local module=$1
+
+    echo -n "Testing required Perl module - \"$module\": "
+
+    if ! error=$( perl -M$module -e '' 2>&1 > /dev/null ); then
+        echo_red "FAIL"
+        echo "   Try: perl -MCPAN -e 'install $module'"
+        exit
+    else
+        echo_green "OK"
+        log "OK"
+    fi
+}
+
+# Function to test if the required version of Ruby is installed.
+function test_ruby
+{
+    echo -n "Testing Ruby version ... "
+
+    if error=$( ruby -e 'raise "Ruby version 1.9 required--this is only #{RUBY_VERSION}" if RUBY_VERSION < "1.9"' 2>&1 ); then
+        echo_green "OK"
+        log "OK"
+    else
+        echo $error | sed "s/.*: //"
+        echo_red "FAIL"
+        exit
+    fi  
+}
+
+# Function to test if a given Ruby gem is installed.
+function test_ruby_gem
+{
+    local gem=$1
+
+    echo -n "Testing required Ruby gem - \"$gem\": "
+
+    if error=$( gem list --local | grep $gem ); then
+        echo_green "OK"
+        log "OK"
+    else
+        echo_red "FAIL"
+        echo "   Try: gem install $gem"
+        exit
+    fi
+}
+
+# Function to test is a given auxillary program is in $PATH.
+function test_aux_program
+{
+    local program=$1
+
+    echo -n "Testing auxiliary program - \"$program\": "
+
+    if command -v $program >/dev/null; then
+        echo_green "OK"
+        log "OK"
+    else
+        echo_yellow "WARNING"
+        log "WARNING"
+    fi
+}