fixing usearch upgrade

[biopieces.git] / bp_test / lib / test.sh

diff --git a/bp_test/lib/test.sh b/bp_test/lib/test.sh
index 18ee4c342117c8fd919d094b9bfcac4d212165cc..7ce41900d12068649fdf92320f6110f779c17398 100755 (executable)
--- a/bp_test/lib/test.sh
+++ b/bp_test/lib/test.sh
@@ -3,21 +3,24 @@
 bp=`basename $0 | sed s/^test_//`
 in="$BP_DIR/bp_test/in/$bp.in"
 out="$BP_DIR/bp_test/out/$bp.out"
-tmp="$BP_TMP/$bp.out"
-tmp_dir="$BP_TMP/test_tmp"
+tmp="$BP_TMP/$USER.$bp.out"
+tmp_dir="$BP_TMP/$USER.test_tmp"
 log_file="$BP_TMP/$USER.test.log"
 
+# Function to run a given command (verbose).
 function run
 {
     local command=$1
 
     msg="${command/$BP_DIR/\$BP_DIR}"
     msg="${msg//$BP_TMP/\$BP_TMP}"
+    msg="${msg/$BP_DIR/\$BP_DIR}"
 
     echo -n "Testing $msg ... "
     eval $command > /dev/null 2>&1
 }
 
+# Function to run a given command (quiet).
 function run_quiet
 {
     local command=$1
@@ -25,6 +28,8 @@ function run_quiet
     eval $command > /dev/null 2>&1
 }
 
+# Function to assert no difference between
+# two given files.
 function assert_no_diff
 {
     local src=$1
@@ -53,6 +58,38 @@ function assert_no_diff
     fi     
 }
 
+# Function to assert no difference between the content
+# of two given direcories (recursive).
+function assert_no_diff_dir
+{
+    local src_dir=$1
+    local dst_dir=$2
+
+    if [ ! -d $src_dir ]; then
+        echo_red "FAIL"
+        log "FAIL"
+        return
+    fi
+
+    if [ ! -d $dst_dir ]; then
+        echo_red "FAIL"
+        log "FAIL"
+        return
+    fi
+
+    local src_cksum=`find $src_dir -type f | grep -v "\.svn" | sort | xargs cat | cksum`
+    local dst_cksum=`find $dst_dir -type f | grep -v "\.svn" | sort | xargs cat | cksum`
+
+    if [ "$src_cksum" == "$dst_cksum" ]; then
+        echo_green "OK"
+        log "OK"
+    else
+        echo_red "FAIL"
+        log "FAIL"
+    fi
+}
+
+# Function to assert that all given files do exists.
 function assert_files_exists
 {
     error=0
@@ -72,6 +109,7 @@ function assert_files_exists
     fi
 }
 
+# Function to output a given message to the log file.
 function log
 {
     local msg=$1
@@ -79,6 +117,7 @@ function log
     echo "$msg" >> $log_file
 }
 
+# Function that renders a given message in ASCII green.
 function echo_green
 {
     local msg=$1
@@ -86,6 +125,7 @@ function echo_green
     echo -e "\033[32;38m$msg\033[0m"
 }
 
+# Function that renders a given message in ASCII yellow.
 function echo_yellow
 {
     local msg=$1
@@ -93,6 +133,7 @@ function echo_yellow
     echo -e "\033[33;38m$msg\033[0m"
 }
 
+# Function that renders a given message in ASCII red.
 function echo_red
 {
     local msg=$1
@@ -100,6 +141,7 @@ function echo_red
     echo -e "\033[31;38m$msg\033[0m"
 }
 
+# Function to clean the temporary file.
 function clean
 {
     if [ -f "$tmp" ]; then
@@ -107,12 +149,14 @@ function clean
     fi
 }
 
+# Function to test if the required version of Perl is installed.
 function test_perl
 {
     echo -n "Testing Perl version ... "
 
     if error=$( perl -e 'use 5.8.0;' 2>&1 ); then
         echo_green "OK"
+        log "OK"
     else
         echo $error | sed "s/, stopped.*//"
         echo_red "FAIL"
@@ -120,11 +164,12 @@ function test_perl
     fi  
 }
 
+# Function to test if a given Perl module is installed.
 function test_perl_module
 {
     local module=$1
 
-    echo -n "Checking required Perl module - \"$module\": "
+    echo -n "Testing required Perl module - \"$module\": "
 
     if ! error=$( perl -M$module -e '' 2>&1 > /dev/null ); then
         echo_red "FAIL"
@@ -132,15 +177,18 @@ function test_perl_module
         exit
     else
         echo_green "OK"
+        log "OK"
     fi
 }
 
+# Function to test if the required version of Ruby is installed.
 function test_ruby
 {
     echo -n "Testing Ruby version ... "
 
     if error=$( ruby -e 'raise "Ruby version 1.9 required--this is only #{RUBY_VERSION}" if RUBY_VERSION < "1.9"' 2>&1 ); then
         echo_green "OK"
+        log "OK"
     else
         echo $error | sed "s/.*: //"
         echo_red "FAIL"
@@ -148,14 +196,16 @@ function test_ruby
     fi  
 }
 
+# Function to test if a given Ruby gem is installed.
 function test_ruby_gem
 {
     local gem=$1
 
-    echo -n "Checking required Ruby gem - \"$gem\": "
+    echo -n "Testing required Ruby gem - \"$gem\": "
 
     if error=$( gem list --local | grep $gem ); then
         echo_green "OK"
+        log "OK"
     else
         echo_red "FAIL"
         echo "   Try: gem install $gem"
@@ -163,3 +213,18 @@ function test_ruby_gem
     fi
 }
 
+# Function to test is a given auxillary program is in $PATH.
+function test_aux_program
+{
+    local program=$1
+
+    echo -n "Testing auxiliary program - \"$program\": "
+
+    if command -v $program >/dev/null; then
+        echo_green "OK"
+        log "OK"
+    else
+        echo_yellow "WARNING"
+        log "WARNING"
+    fi
+}