tmpfile = File.join(tmpdir, "tmp.fna")
Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
- Fasta.open(tmpfile, mode="w") do |fasta_io|
+ Fasta.open(tmpfile, "w") do |fasta_io|
input.each_record do |record|
output.puts record unless options[:no_stream]