bam1_core_t *c;
uint64_t save_off, last_off, n_mapped, n_unmapped, off_beg, off_end, n_no_coor;
+ h = bam_header_read(fp);
+ if(h == 0) {
+ fprintf(stderr, "[bam_index_core] Invalid BAM header.");
+ return NULL;
+ }
+
idx = (bam_index_t*)calloc(1, sizeof(bam_index_t));
b = (bam1_t*)calloc(1, sizeof(bam1_t));
- h = bam_header_read(fp);
c = &b->core;
idx->n = h->n_targets;
strcat(strcpy(fnidx, fn), ".bai");
fprintf(stderr, "[bam_index_load] attempting to download the remote index file.\n");
download_from_remote(fnidx);
+ free(fnidx);
idx = bam_index_load_local(fn);
}
if (idx == 0) fprintf(stderr, "[bam_index_load] fail to load BAM index.\n");
if (fpidx == 0) {
fprintf(stderr, "[bam_index_build2] fail to create the index file.\n");
free(fnidx);
+ bam_index_destroy(idx);
return -1;
}
bam_index_save(idx, fpidx);