- vector<string> primerNameVector; //needed here?
- vector<string> barcodeNameVector; //needed here?
-
- map<string, int> combos; //needed here?
- map<string, int> groupToIndex; //needed here?
+ vector<unsigned long long> getFlowFileBreaks();
+ int createProcessesCreateTrim(string, string, string, string, vector<vector<string> >);
+ int driverCreateTrim(string, string, string, string, vector<vector<string> >, linePair*);
+ int getOligos(vector<vector<string> >&); //a rewrite of what is in trimseqscommand.h
+
+