7 typedef struct __mc_aux_t mc_aux_t;
9 #define MC_PTYPE_FULL 1
10 #define MC_PTYPE_COND2 2
16 mc_aux_t *mc_init(int n);
17 void mc_init_prior(mc_aux_t *ma, int type, double theta);
18 void mc_destroy(mc_aux_t *ma);
19 double mc_freq0(int ref, int *n, const bam_pileup1_t **plp, mc_aux_t *ma, int *_ref, int *alt);
20 double mc_freq_iter(double f0, mc_aux_t *ma);
21 double mc_freq_post(mc_aux_t *ma);
22 double mc_ref_prob(mc_aux_t *ma);
23 int mc_call_gt(const mc_aux_t *ma, double f0, int k);